Testing surfaces on Jmol

back to documentation page

Load molecule:

Coarse pseudo-surfaces:

(mutually exclusive here)

Polished isosurfaces:

   (Load a molecule first, from above or below choices)

Calculate a surface on the currently selected set of atoms:
(caution! may take several seconds or even minutes)
(mutually exclusive here)

• solvent-accesible surface:
• solvent-excluded surface (1.2 Å):
• solvent-excluded surface (1.4 Å)
• Last isoSurface:

Or choose pre-made examples of molecular surfaces
(these are JVXL files with solvent-excluded surface, 1.2 Å probe):

An A-T base pair in DNA (66 atoms)   

Two base pairs (82 atoms)   

Four base pairs (164 atoms)   

Six base pairs (246 atoms)   

A DNA portion of 17 base pairs (701 atoms)   

A subunit of streptavidin (876 atoms) with its biotin ligand bound and a little portion of another subunit covering the ligand ("cap")   
    (876 atoms)
    (50 atoms)
Biotin:

A subunit in hemoglobin (1123 atoms) with its hem group and a bound oxygen molecule   
Oxyhem:
Water: